SNP Profiles of SPA 9 [COL]   View Data

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 Key

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_Input profile
CCTTGGCCCTCCAGACGTCGCTTTGGAG
1._SPA_9_[COL]
AC__CCCT_AGACGTCG_TTGG_
2._SPA_9_[COL]
AC__CCCT_AGACGTCG_TTGG_
3._GC-01-099-5-16
AC_GGCCCTCGAGACGTCGCTTTGGAG
4._GC-01-099-5-16
AC_GGCCCTCGAGACGTCGCTTTGGAG
5._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
6._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
7._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
8._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
9._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
10._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
11._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
12._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
13._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
14._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
15._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
16._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
17._RUQ_235
ACCT_CCCT_AGACGTCG_TTGG_
18._SPA_9_[COL]
ACCT_CGCT_AACCGGGG_CCGG_
19._RUQ_235
_AGGGGGAGCG_ACACCGAGAACCAG
 1516171819202122232425262728
_Input profile
CCCGCGAACCGTAGATGTCTCTTTCCAA
1._SPA_9_[COL]
_CG_AA____GT__TTCCAA
2._SPA_9_[COL]
_CG_AA____GT__TTCCAA
3._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
4._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
5._SPA_9_[COL]
_CG_AA____GT__TTCCAA
6._SPA_9_[COL]
_CG_AA____GT__TTCCAA
7._SPA_9_[COL]
_CG_AA____GT__TTCCAA
8._SPA_9_[COL]
_CG_AA____GT__TTCCAA
9._SPA_9_[COL]
_CG_AA____GT__TTCCAA
10._SPA_9_[COL]
_CG_AA____GT__TTCCAA
11._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
12._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
13._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
14._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
15._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
16._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
17._RUQ_235
_CG_AA____GT__TTCCAG
18._SPA_9_[COL]
_CG_AG____GT__TTCGAA
19._RUQ_235
CCCG_AA_ACAG_ACAGAGAAGGAA

Input profile: SPA_9_[COL] RUQ_235

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._SPA_9_[COL]

96.7 %
15 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 9 > FP
 Dapeng Zhang, 2016

2._SPA_9_[COL]

96.7 %
15 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 4
 Dapeng Zhang, 2016

3._SPA_9_[COL] GC-01-099-5-16

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._SPA_9_[COL] GC-01-099-5-16

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 6 > FP
 Dapeng Zhang, 2016

6._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 14 > F
 Dapeng Zhang, 2016

7._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 1 > FP
 Dapeng Zhang, 2016

8._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 5
 Dapeng Zhang, 2016

9._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 3
 Dapeng Zhang, 2016

10._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

12._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

13._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._SPA_9_[COL] RUQ_235

90.6 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._SPA_9_[COL]

65.6 %
16 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

19._SPA_9_[COL] RUQ_235

41.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP144 2TcSNP151 3TcSNP174 4TcSNP226 5TcSNP242
6TcSNP448 7TcSNP469 8TcSNP529 9TcSNP560 10TcSNP577
11TcSNP602 12TcSNP619 13TcSNP723 14TcSNP731 15TcSNP823
16TcSNP872 17TcSNP878 18TcSNP998 19TcSNP999 20TcSNP1063
21TcSNP1111 22TcSNP1126 23TcSNP1253 24TcSNP1309 25TcSNP1439
26TcSNP1442 27TcSNP1458 28TcSNP1484